I'm curious KC. Why you say to "forget #41 chain". It is far superior to the Chinese 415 that comes in the kits. If made by a good company, Diamond, Browning, etc. the #41 is precision made with no kinks, twists or binding rollers/side plates. They are not pre-stretched which requires many more initial adjustments to maintain tension than the #41 counterparts.
Yes, I've found a couple of decent kit chains but the majority are not up to the standards we need.
The differenc in size is negligible so there should be no interference anywhere. The kit chain and the spark plug boots are the two things that never get used on my bikes.
Tom