It sounds as though you are running into a rich condition at full throttle. You may need to go to a smaller jet. You can buy a new one or do the solder and drill trick. I found that after modifying my intake and exhaust ports that it ran richer and I needed to make the jet smaller. Here is the drill kit that I bought.
25pc. Carburetor Drill Kit I also attached a drill chart for reference.
In my opinion these carbs are jetted to deal with all of the issues the engine has, intake leak and poor fit of intake and exhaust manifold. By the time you fix these things the carb is no longer jetted correctly. You can double check that the rich condition is your issue by running the bike at full throttle and slowly applying a little choke. If it runs better with a little choke you would need a larger jet, if it runs worse you will need a smaller jet.