The critical first step is cleaning up the intake and exhaust manifolds, making sure the mating surfaces are flush and replacing the gaskets with proper ones.
It's quite common for the stock gaskets to be cut "wrong" for these engines, the diameter of the hole in the middle nowhere near the same as their respective ports.
Stock on the left - modified on the right;
You can see how this would restrict flow if not attended to;
Even the stock exaust pipe suffers from this with the mounting plate port way too small and sloppy welding protruding on the inside, the intake is no different;
Fortunately these motors are incredibly simple, air leaks the biggest performance killer - make sure all gaskets are sealed properly and don't forget to check the torque on the headbolts from time to time.
I'd recommend replacing the stock "filter" with a real one and tending to the sloppiness first. After that I'd recommend the SBP expansion chamber:
Sick Bike Parts as it's one of the mods that has the most effect for the least effort.
After alla that's squared away - then we dive inside with the ol' Dremel
